fixed, pushing fix to the patcher in a couple minutes. I just needed to add the following xml to the core_process.xml so that it would overlay the custom poi's over the games current poi's.
Code:
Parent.QM_Overlay.Icons.tutorial_island02.Visible=Parent.MapPage.Icons.tutorial_island02.Visible
Parent.MapPage.Icons.tutorial_island02.OnHide='Parent.Parent.Parent.QM_Overlay.Icons.tutorial_island02.Visible=false'
Parent.MapPage.Icons.tutorial_island02.OnShow='Parent.Parent.Parent.QM_Overlay.Icons.tutorial_island02.Visible=true'