In options make sure it has the correct path it could verry well be installing all the new things to a ui directory you are not even using. Go into the UI directory that you are using rename eq2map to _eq2map or what ever fits your fancy and rerun the AU. If it is set up correctly then you will have a new folder named eq2map in the directory of the UI are use, if not, well there will not be a new folder named eq2map in there.
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